HL_8P4V_219

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

8P4V|1|sR|C|1700, 8P4V|1|sR|A|1701, 8P4V|1|sR|A|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_219 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.0613

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89346.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8P4V|1|sR|A|1691
8P4V|1|sR|G|1692
8P4V|1|sR|A|1693
8P4V|1|sR|A|1694
8P4V|1|sR|G|1695
8P4V|1|sR|G|1696
8P4V|1|sR|G|1697
8P4V|1|sR|G|1698
8P4V|1|sR|G|1699
8P4V|1|sR|C|1700
8P4V|1|sR|A|1701
8P4V|1|sR|A|1702
8P4V|1|sR|C|1703
8P4V|1|sR|U|1704
8P4V|1|sR|C|1705
8P4V|1|sR|C|1706
8P4V|1|sR|A|1707
8P4V|1|sR|U|1708
8P4V|1|sR|C|1709
8P4V|1|sR|U|1710

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain s6

40S ribosomal protein S6-A