HL_8P4V_225

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

8P4V|1|AR|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_225 not in the Motif Atlas

Homologous match to HL_8P9A_163

Geometric discrepancy: 0.0814

The information below is about HL_8P9A_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23509.1

Basepair signature

cSH-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8P4V|1|AR|G|2534
8P4V|1|AR|A|2535
8P4V|1|AR|A|2536
8P4V|1|AR|U|2537
8P4V|1|AR|U|2538
8P4V|1|AR|C|2539
8P4V|1|AR|A|2540
8P4V|1|AR|U|2541
8P4V|1|AR|U|2542
8P4V|1|AR|U|2543
8P4V|1|AR|U|2544
8P4V|1|AR|C|2545

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CJ

60S ribosomal protein L8-A

Chain DI

60S ribosomal protein L34-A

Chain s1

40S ribosomal protein S1-A