HL_8P9A_062
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8P9A|1|1|G|2898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P9A_062 not in the Motif Atlas
- Homologous match to HL_8P9A_173
- Geometric discrepancy: 0.0689
- The information below is about HL_8P9A_173
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
8P9A|1|1|A|2897
8P9A|1|1|G|2898
8P9A|1|1|C|2899
8P9A|1|1|A|2900
8P9A|1|1|G|2901
8P9A|1|1|A|2902
8P9A|1|1|A|2903
8P9A|1|1|U|2904
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AN
- Ubiquitin-60S ribosomal protein L40
- Chain q
- 60S ribosomal protein L9-A
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