HL_8PV4_016
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 8PV4|1|C1|U|677, 8PV4|1|C1|A|679
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV4_016 not in the Motif Atlas
- Homologous match to HL_8C3A_015
- Geometric discrepancy: 0.0807
- The information below is about HL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8PV4|1|C1|G|674
8PV4|1|C1|U|675
8PV4|1|C1|G|676
8PV4|1|C1|U|677
8PV4|1|C1|A|678
8PV4|1|C1|A|679
8PV4|1|C1|A|680
8PV4|1|C1|A|681
8PV4|1|C1|C|682
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain LY
- 60S ribosomal protein L26-like protein
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