HL_8PV4_025

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAACUG

Length

8 nucleotides

Bulged bases

8PV4|1|C1|C|1064

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV4_025 not in the Motif Atlas

Geometric match to HL_5J7L_024

Geometric discrepancy: 0.2264

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8PV4|1|C1|C|1059
8PV4|1|C1|U|1060
8PV4|1|C1|U|1061
8PV4|1|C1|A|1062
8PV4|1|C1|A|1063
8PV4|1|C1|C|1064
8PV4|1|C1|U|1065
8PV4|1|C1|G|1066

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LT

60S ribosomal protein l21-like protein