HL_8PV4_047
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8PV4|1|C1|A|2101, 8PV4|1|C1|A|2102, 8PV4|1|C1|U|2103, 8PV4|1|C1|A|2107
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV4_047 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.1103
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8PV4|1|C1|U|2098
8PV4|1|C1|C|2099
8PV4|1|C1|U|2100
8PV4|1|C1|A|2101
8PV4|1|C1|A|2102
8PV4|1|C1|U|2103
8PV4|1|C1|U|2104
8PV4|1|C1|A|2105
8PV4|1|C1|A|2106
8PV4|1|C1|A|2107
8PV4|1|C1|A|2108
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain Lj
- Ribosomal protein L37
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