HL_8QCQ_044
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUUAGCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8QCQ|1|A|A|1809, 8QCQ|1|A|G|1810, 8QCQ|1|A|C|1811, 8QCQ|1|A|A|1815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QCQ_044 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.0585
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8QCQ|1|A|U|1806
8QCQ|1|A|U|1807
8QCQ|1|A|U|1808
8QCQ|1|A|A|1809
8QCQ|1|A|G|1810
8QCQ|1|A|C|1811
8QCQ|1|A|A|1812
8QCQ|1|A|A|1813
8QCQ|1|A|A|1814
8QCQ|1|A|A|1815
8QCQ|1|A|A|1816
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain 7
- ApdA nascent chain
- Chain C
- 50S ribosomal protein L2
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