HL_8QCQ_097

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUUCAGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_097 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1511

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8QCQ|1|a|A|1143
8QCQ|1|a|U|1144
8QCQ|1|a|U|1145
8QCQ|1|a|C|1146
8QCQ|1|a|A|1147
8QCQ|1|a|G|1148
8QCQ|1|a|U|1149
8QCQ|1|a|U|1150

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9