HL_8QCQ_101
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAUCAGCAUGC
- Length
- 11 nucleotides
- Bulged bases
- 8QCQ|1|a|U|1373
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QCQ_101 not in the Motif Atlas
- Homologous match to HL_5J7L_029
- Geometric discrepancy: 0.1135
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8QCQ|1|a|G|1365
8QCQ|1|a|A|1366
8QCQ|1|a|U|1367
8QCQ|1|a|C|1368
8QCQ|1|a|A|1369
8QCQ|1|a|G|1370
8QCQ|1|a|C|1371
8QCQ|1|a|A|1372
8QCQ|1|a|U|1373
8QCQ|1|a|G|1374
8QCQ|1|a|C|1375
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
Coloring options: