HL_8QYX_051

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8QYX|1|A2|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_051 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0782

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8QYX|1|A2|U|3796
8QYX|1|A2|C|3797
8QYX|1|A2|U|3798
8QYX|1|A2|A|3799
8QYX|1|A2|A|3800
8QYX|1|A2|U|3801
8QYX|1|A2|U|3802
8QYX|1|A2|A|3803
8QYX|1|A2|G|3804

Current chains

Chain A2

28S rRNA

Nearby chains

Chain P1

60S ribosomal protein L23