HL_8RDV_031

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_031 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.0798

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8RDV|1|Z2|C|1076
8RDV|1|Z2|G|1077
8RDV|1|Z2|U|1078
8RDV|1|Z2|A|1079
8RDV|1|Z2|A|1080
8RDV|1|Z2|U|1081
8RDV|1|Z2|A|1082
8RDV|1|Z2|G|1083

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain GR

Large ribosomal subunit protein uL6

Chain ep

Large ribosomal subunit protein bL36