HL_8RDV_086
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8RDV|1|iN|U|837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDV_086 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.0749
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8RDV|1|iN|G|830
8RDV|1|iN|A|831
8RDV|1|iN|U|832
8RDV|1|iN|U|833
8RDV|1|iN|A|834
8RDV|1|iN|G|835
8RDV|1|iN|A|836
8RDV|1|iN|U|837
8RDV|1|iN|A|838
8RDV|1|iN|C|839
8RDV|1|iN|C|840
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain KU
- Small ribosomal subunit protein uS11
- Chain V
- Heterogenous tRNA
- Chain Y
- Heterogenous mRNA
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
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