HL_8RJC_020
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_020 not in the Motif Atlas
- Geometric match to HL_1ZCI_002
- Geometric discrepancy: 0.3507
- The information below is about HL_1ZCI_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_94376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8RJC|1|K|C|1436
8RJC|1|K|C|1437
8RJC|1|K|U|1438
8RJC|1|K|U|1440
8RJC|1|K|C|1441
8RJC|1|K|C|1442
8RJC|1|K|A|1443
8RJC|1|K|G|1444
8RJC|1|K|U|1445
8RJC|1|K|C|1446
8RJC|1|K|C|1447
8RJC|1|K|G|1448
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain F
- Ribosomal Protein uL30
- Chain Q
- Ribosomal protein L18
- Chain b
- 60S ribosomal protein L29
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