HL_8RJC_023
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- ACGUGCGAAU
- Length
- 10 nucleotides
- Bulged bases
- 8RJC|1|K|U|1596, 8RJC|1|K|A|1600
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_023 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.0899
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8RJC|1|K|A|1593
8RJC|1|K|C|1594
8RJC|1|K|G|1595
8RJC|1|K|U|1596
8RJC|1|K|G|1597
8RJC|1|K|C|1598
8RJC|1|K|G|1599
8RJC|1|K|A|1600
8RJC|1|K|A|1601
8RJC|1|K|U|1602
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain B
- Nascent chain
- Chain P
- uL22
- Chain j
- Ribosomal protein L37
- Chain w
- Ribosomal protein L3
Coloring options: