HL_8RJC_045
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8RJC|1|K|C|2794, 8RJC|1|K|G|2796, 8RJC|1|K|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_045 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.079
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8RJC|1|K|C|2792
8RJC|1|K|G|2793
8RJC|1|K|C|2794
8RJC|1|K|A|2795
8RJC|1|K|G|2796
8RJC|1|K|C|2797
8RJC|1|K|A|2798
8RJC|1|K|G|2799
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain B
- Nascent chain
- Chain C
- Large ribosomal subunit protein uL4
- Chain P
- uL22
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39-like
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