HL_8RJC_053

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8RJC|1|K|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_053 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1333

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8RJC|1|K|G|3757
8RJC|1|K|U|3758
8RJC|1|K|A|3759
8RJC|1|K|A|3760
8RJC|1|K|C|3761
8RJC|1|K|U|3762
8RJC|1|K|A|3763
8RJC|1|K|U|3764
8RJC|1|K|G|3765
8RJC|1|K|A|3766
8RJC|1|K|C|3767

Current chains

Chain K

28S rRNA

Nearby chains

Chain q

Transfer RNA; tRNA