HL_8RJC_057

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8RJC|1|K|A|4214, 8RJC|1|K|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_057 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1363

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8RJC|1|K|U|4210
8RJC|1|K|C|4211
8RJC|1|K|A|4212
8RJC|1|K|A|4213
8RJC|1|K|A|4214
8RJC|1|K|C|4215
8RJC|1|K|G|4216
8RJC|1|K|G|4217
8RJC|1|K|U|4218
8RJC|1|K|A|4219
8RJC|1|K|A|4220
8RJC|1|K|C|4221
8RJC|1|K|G|4222

Current chains

Chain K

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29