HL_8RXH_023

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8RXH|1|L1|A|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_023 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.143

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RXH|1|L1|G|961
8RXH|1|L1|C|962
8RXH|1|L1|G|963
8RXH|1|L1|A|964
8RXH|1|L1|A|965
8RXH|1|L1|A|966
8RXH|1|L1|G|967
8RXH|1|L1|A|968
8RXH|1|L1|C|969

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain LA

Putative 60S ribosomal protein L2

Chain LM

Ribosomal protein L15

Chain Lj

Ribosomal protein L37