HL_8RXH_037
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CGCAUCAG
- Length
- 8 nucleotides
- Bulged bases
- 8RXH|1|L2|C|29, 8RXH|1|L2|U|31, 8RXH|1|L2|A|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_037 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.1014
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8RXH|1|L2|C|27
8RXH|1|L2|G|28
8RXH|1|L2|C|29
8RXH|1|L2|A|30
8RXH|1|L2|U|31
8RXH|1|L2|C|32
8RXH|1|L2|A|33
8RXH|1|L2|G|34
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LC
- Putative ribosomal protein L1a
- Chain LT
- Putative 60S ribosomal protein L17
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Putative 60S ribosomal protein L39
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