HL_8RXH_041
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- U(A2M)UAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8RXH|1|L2|A|384, 8RXH|1|L2|A|385, 8RXH|1|L2|U|386, 8RXH|1|L2|A|390
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_041 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.2592
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8RXH|1|L2|U|381
8RXH|1|L2|A2M|382
8RXH|1|L2|U|383
8RXH|1|L2|A|384
8RXH|1|L2|A|385
8RXH|1|L2|U|386
8RXH|1|L2|U|387
8RXH|1|L2|A|388
8RXH|1|L2|A|389
8RXH|1|L2|A|390
8RXH|1|L2|A|391
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- Putative 60S ribosomal protein L2
- Chain Lj
- Ribosomal protein L37
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