HL_8RXH_044
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- G(PSU)A(A2M)C(PSU)AUGAC
- Length
- 11 nucleotides
- Bulged bases
- 8RXH|1|L2|C|503
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_044 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.3824
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RXH|1|L2|G|499
8RXH|1|L2|PSU|500
8RXH|1|L2|A|501
8RXH|1|L2|A2M|502
8RXH|1|L2|C|503
8RXH|1|L2|PSU|504
8RXH|1|L2|A|505
8RXH|1|L2|U|506
8RXH|1|L2|G|507
8RXH|1|L2|A|508
8RXH|1|L2|C|509
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain S2
- Transfer RNA; tRNA
- Chain S3
- Transfer RNA; tRNA
- Chain S5
- mRNA_chain_S5
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