HL_8RXH_087

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUUGACUC

Length

8 nucleotides

Bulged bases

8RXH|1|S1|U|297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_087 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.3183

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8RXH|1|S1|G|291
8RXH|1|S1|U|292
8RXH|1|S1|U|293
8RXH|1|S1|G|294
8RXH|1|S1|A|295
8RXH|1|S1|C|296
8RXH|1|S1|U|297
8RXH|1|S1|C|298

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SU

Ribosomal protein S17 family protein