HL_8RXH_099

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UGACUAAAG

Length

9 nucleotides

Bulged bases

8RXH|1|S1|G|866, 8RXH|1|S1|C|868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_099 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.2761

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8RXH|1|S1|U|865
8RXH|1|S1|G|866
8RXH|1|S1|A|867
8RXH|1|S1|C|868
8RXH|1|S1|U|869
8RXH|1|S1|A|870
8RXH|1|S1|A|871
8RXH|1|S1|A|872
8RXH|1|S1|G|873

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SD

Putative 40S ribosomal protein S9

Chain SE

40S ribosomal protein S4

Chain SZ

40S ribosomal protein S24