HL_8RXH_102
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_102 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.1215
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8RXH|1|S1|A|1147
8RXH|1|S1|G|1148
8RXH|1|S1|G|1149
8RXH|1|S1|U|1150
8RXH|1|S1|G|1151
8RXH|1|S1|A|1152
8RXH|1|S1|A|1153
8RXH|1|S1|A|1154
8RXH|1|S1|U|1155
8RXH|1|S1|U|1156
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain S4
- Transfer RNA; tRNA
- Chain S5
- mRNA_chain_S5
- Chain SA
- 40S ribosomal protein S3a
- Chain SH
- 40S ribosomal protein S5
- Chain SO
- 40S ribosomal protein S14
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