HL_8RXH_116
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GCUCAUCA(A2M)AC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_116 not in the Motif Atlas
- Geometric match to HL_5J7L_029
- Geometric discrepancy: 0.2711
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RXH|1|S1|G|2013
8RXH|1|S1|C|2014
8RXH|1|S1|U|2015
8RXH|1|S1|C|2016
8RXH|1|S1|A|2017
8RXH|1|S1|U|2018
8RXH|1|S1|C|2019
8RXH|1|S1|A|2020
8RXH|1|S1|A2M|2021
8RXH|1|S1|A|2022
8RXH|1|S1|C|2023
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SL
- Putative 40S ribosomal protein S16
- Chain SM
- Putative ribosomal protein S20
- Chain SS
- Putative ribosomal protein S29
- Chain SX
- 40S ribosomal protein S19-like protein
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