HL_8T3A_058

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3A_058 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1238

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T3A|1|A1|C|2840
8T3A|1|A1|G|2841
8T3A|1|A1|U|2842
8T3A|1|A1|U|2843
8T3A|1|A1|C|2844
8T3A|1|A1|A|2845
8T3A|1|A1|U|2846
8T3A|1|A1|A|2847
8T3A|1|A1|G|2848

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain DC

Elongation factor 2