HL_8T3A_081
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GAUGAUUC
- Length
- 8 nucleotides
- Bulged bases
- 8T3A|1|B5|U|249
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3A_081 not in the Motif Atlas
- Homologous match to HL_8C3A_197
- Geometric discrepancy: 0.2924
- The information below is about HL_8C3A_197
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8T3A|1|B5|G|243
8T3A|1|B5|A|244
8T3A|1|B5|U|245
8T3A|1|B5|G|246
8T3A|1|B5|A|247
8T3A|1|B5|U|248
8T3A|1|B5|U|249
8T3A|1|B5|C|250
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BG
- 40S ribosomal protein S6-A
- Chain BL
- 40S ribosomal protein S11-A
Coloring options: