HL_8T3B_061

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8T3B|1|A1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3B_061 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1275

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8T3B|1|A1|A|2897
8T3B|1|A1|G|2898
8T3B|1|A1|C|2899
8T3B|1|A1|A|2900
8T3B|1|A1|G|2901
8T3B|1|A1|A|2902
8T3B|1|A1|A|2903
8T3B|1|A1|U|2904

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain DC

Elongation factor 2