HL_8T5H_010

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_010 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1769

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8T5H|1|B|U|158
8T5H|1|B|G|159
8T5H|1|B|A|160
8T5H|1|B|A|161
8T5H|1|B|U|162
8T5H|1|B|C|163
8T5H|1|B|C|164
8T5H|1|B|A|165
8T5H|1|B|U|166
8T5H|1|B|A|167
8T5H|1|B|G|168

Current chains

Chain B

23S

Nearby chains

Chain X

50S ribosomal protein L28