HL_8UIW_005

3D structure

PDB id

8UIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N

Experimental method

X-RAY DIFFRACTION

Resolution

2.77 Å

Loop

Sequence

GAAACAC

Length

7 nucleotides

Bulged bases

8UIW|1|R|A|30, 8UIW|1|R|A|32

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIW_005 not in the Motif Atlas

Geometric match to HL_4KZD_001

Geometric discrepancy: 0.1785

The information below is about HL_4KZD_001

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_64036.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

20

Unit IDs

8UIW|1|R|G|29
8UIW|1|R|A|30
8UIW|1|R|A|31
8UIW|1|R|A|32
8UIW|1|R|C|33
8UIW|1|R|A|34
8UIW|1|R|C|35

Current chains

Chain R

yjdF RNA (R. gauvreauii)

Nearby chains

Chain A

Fab BL3-6 S97N heavy chain

Chain B

Fab BL3-6 S97N light chain