HL_8UPO_023
3D structure
- PDB id
- 8UPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8UPO|1|D|U|793
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UPO_023 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.0806
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8UPO|1|D|G|786
8UPO|1|D|A|787
8UPO|1|D|U|788
8UPO|1|D|U|789
8UPO|1|D|A|790
8UPO|1|D|G|791
8UPO|1|D|A|792
8UPO|1|D|U|793
8UPO|1|D|A|794
8UPO|1|D|C|795
8UPO|1|D|C|796
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 21 nt long spacer
- Chain A
- Transfer RNA; tRNA
- Chain B
- Transfer RNA; tRNA
- Chain Q
- 30S ribosomal protein S11
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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