HL_8UPO_079

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8UPO|1|a|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UPO_079 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0828

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UPO|1|a|A|1630
8UPO|1|a|G|1631
8UPO|1|a|A|1632
8UPO|1|a|G|1633
8UPO|1|a|A|1634
8UPO|1|a|A|1635
8UPO|1|a|U|1636

Current chains

Chain a

23S rRNA

Nearby chains