HL_8UT0_006

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8UT0|1|2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_006 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.1695

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8UT0|1|2|G|243
8UT0|1|2|A|244
8UT0|1|2|U|245
8UT0|1|2|G|246
8UT0|1|2|A|247
8UT0|1|2|U|248
8UT0|1|2|U|249
8UT0|1|2|C|250

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain ST

40S ribosomal protein S6-A

Chain SX

40S ribosomal protein S11-A