3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
8UT0|1|2|C|402, 8UT0|1|2|G|403
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UT0_010 not in the Motif Atlas
Homologous match to HL_8C3A_201
Geometric discrepancy: 0.1158
The information below is about HL_8C3A_201
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8UT0|1|2|C|393
8UT0|1|2|C|394
8UT0|1|2|U|395
8UT0|1|2|G|396
8UT0|1|2|A|397
8UT0|1|2|G|398
8UT0|1|2|A|399
8UT0|1|2|A|400
8UT0|1|2|A|401
8UT0|1|2|C|402
8UT0|1|2|G|403
8UT0|1|2|G|404

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SS
40S ribosomal protein S4-A
Chain ST
40S ribosomal protein S6-A
Chain SV
40S ribosomal protein S8-A
Chain Sd
40S ribosomal protein S24-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1113 s