HL_8UT0_014

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_014 not in the Motif Atlas

Homologous match to HL_8C3A_205

Geometric discrepancy: 0.0985

The information below is about HL_8C3A_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.2

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UT0|1|2|A|520
8UT0|1|2|A|521
8UT0|1|2|U|522
8UT0|1|2|G|523
8UT0|1|2|U|524
8UT0|1|2|A|525
8UT0|1|2|A|526
8UT0|1|2|A|527
8UT0|1|2|U|528
8UT0|1|2|A|529
8UT0|1|2|C|530
8UT0|1|2|C|531
8UT0|1|2|U|532

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A