HL_8UT0_016

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8UT0|1|2|G|765, 8UT0|1|2|U|767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_016 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.1452

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8UT0|1|2|U|764
8UT0|1|2|G|765
8UT0|1|2|U|766
8UT0|1|2|U|767
8UT0|1|2|C|768
8UT0|1|2|A|769
8UT0|1|2|A|770
8UT0|1|2|A|771
8UT0|1|2|G|772

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A