3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
AGGUGAAAUU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UT0_019 not in the Motif Atlas
Homologous match to HL_8C3A_211
Geometric discrepancy: 0.0938
The information below is about HL_8C3A_211
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.3
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
13

Unit IDs

8UT0|1|2|A|900
8UT0|1|2|G|901
8UT0|1|2|G|902
8UT0|1|2|U|903
8UT0|1|2|G|904
8UT0|1|2|A|905
8UT0|1|2|A|906
8UT0|1|2|A|907
8UT0|1|2|U|908
8UT0|1|2|U|909

Current chains

Chain 2
18S rRNA

Nearby chains

Chain D
Messenger RNA (5'-R(P*AP*AP*UP*AP*UP*GP*AP*AP*AP*A)-3')
Chain SB
40S ribosomal protein S5
Chain SQ
40S ribosomal protein S1-A
Chain SZ
40S ribosomal protein S14-B

Coloring options:


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