HL_8UT0_083
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 8UT0|1|A|A|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UT0_083 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.3119
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UT0|1|A|G|2253
8UT0|1|A|U|2254
8UT0|1|A|A|2255
8UT0|1|A|A|2256
8UT0|1|A|C|2257
8UT0|1|A|U|2258
8UT0|1|A|A|2259
8UT0|1|A|U|2260
8UT0|1|A|G|2261
8UT0|1|A|A|2262
8UT0|1|A|C|2263
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Messenger RNA (5'-R(P*AP*AP*UP*AP*UP*GP*AP*AP*AP*A)-3')
- Chain m
- Transfer RNA; tRNA
- Chain n
- Transfer RNA; tRNA
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