HL_8UT0_084

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8UT0|1|A|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_084 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1198

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8UT0|1|A|U|2292
8UT0|1|A|C|2293
8UT0|1|A|U|2294
8UT0|1|A|A|2295
8UT0|1|A|A|2296
8UT0|1|A|U|2297
8UT0|1|A|U|2298
8UT0|1|A|A|2299
8UT0|1|A|G|2300

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain LX

60S ribosomal protein L23-A