3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UCUAAUUAG
Length
9 nucleotides
Bulged bases
8UT0|1|A|U|2298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UT0_084 not in the Motif Atlas
Homologous match to HL_8C3A_050
Geometric discrepancy: 0.1198
The information below is about HL_8C3A_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_27115.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
22

Unit IDs

8UT0|1|A|U|2292
8UT0|1|A|C|2293
8UT0|1|A|U|2294
8UT0|1|A|A|2295
8UT0|1|A|A|2296
8UT0|1|A|U|2297
8UT0|1|A|U|2298
8UT0|1|A|A|2299
8UT0|1|A|G|2300

Current chains

Chain A
25S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain LX
60S ribosomal protein L23-A

Coloring options:


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