HL_8UT0_109
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8UT0|1|C|C|84, 8UT0|1|C|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UT0_109 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2558
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8UT0|1|C|U|69
8UT0|1|C|G|70
8UT0|1|C|A|71
8UT0|1|C|A|72
8UT0|1|C|U|73
8UT0|1|C|U|74
8UT0|1|C|G|75
8UT0|1|C|C|76
8UT0|1|C|A|77
8UT0|1|C|G|78
8UT0|1|C|A|79
8UT0|1|C|A|80
8UT0|1|C|U|81
8UT0|1|C|U|82
8UT0|1|C|C|83
8UT0|1|C|C|84
8UT0|1|C|G|85
8UT0|1|C|U|86
8UT0|1|C|G|87
8UT0|1|C|A|88
8UT0|1|C|A|89
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- 60S ribosomal protein L26-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ln
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)
Coloring options: