HL_8UYP_044

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUUUCGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UYP_044 not in the Motif Atlas

Geometric match to HL_2D6F_005

Geometric discrepancy: 0.2752

The information below is about HL_2D6F_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8UYP|4|A|G|236
8UYP|4|A|U|237
8UYP|4|A|U|238
8UYP|4|A|U|239
8UYP|4|A|C|240
8UYP|4|A|G|241
8UYP|4|A|U|242
8UYP|4|A|C|243

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains