HL_8V83_009
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- GUAAAUUC
- Length
- 8 nucleotides
- Bulged bases
- 8V83|1|1|A|307, 8V83|1|1|U|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V83_009 not in the Motif Atlas
- Geometric match to HL_2Y9H_005
- Geometric discrepancy: 0.2322
- The information below is about HL_2Y9H_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86870.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8V83|1|1|G|304
8V83|1|1|U|305
8V83|1|1|A|306
8V83|1|1|A|307
8V83|1|1|A|308
8V83|1|1|U|309
8V83|1|1|U|310
8V83|1|1|C|311
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA
Nearby chains
- Chain A
- Ribosome biogenesis protein BRX1
- Chain D
- ATP-dependent RNA helicase HAS1
- Chain N
- Large ribosomal subunit protein eL15A
- Chain m
- Ribosome biogenesis protein ERB1
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