HL_8V83_026

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V83_026 not in the Motif Atlas

Geometric match to HL_6PRV_002

Geometric discrepancy: 0.1516

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8V83|1|1|U|1267
8V83|1|1|G|1268
8V83|1|1|U|1269
8V83|1|1|A|1270
8V83|1|1|A|1271
8V83|1|1|C|1272
8V83|1|1|A|1273
8V83|1|1|A|1274

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2