HL_8V83_042
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8V83|1|2|U|82, 8V83|1|2|C|84, 8V83|1|2|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V83_042 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.5986
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8V83|1|2|U|69
8V83|1|2|G|70
8V83|1|2|A|71
8V83|1|2|A|72
8V83|1|2|U|73
8V83|1|2|U|74
8V83|1|2|G|75
8V83|1|2|C|76
8V83|1|2|A|77
8V83|1|2|G|78
8V83|1|2|A|79
8V83|1|2|A|80
8V83|1|2|U|81
8V83|1|2|U|82
8V83|1|2|C|83
8V83|1|2|C|84
8V83|1|2|G|85
8V83|1|2|U|86
8V83|1|2|G|87
8V83|1|2|A|88
8V83|1|2|A|89
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: