HL_8VFT_050

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

(PSU)UUAAUUAAAA

Length

11 nucleotides

Bulged bases

8VFT|1|5|A|3642, 8VFT|1|5|A|3643, 8VFT|1|5|U|3644, 8VFT|1|5|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_050 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1479

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8VFT|1|5|PSU|3639
8VFT|1|5|U|3640
8VFT|1|5|U|3641
8VFT|1|5|A|3642
8VFT|1|5|A|3643
8VFT|1|5|U|3644
8VFT|1|5|U|3645
8VFT|1|5|A|3646
8VFT|1|5|A|3647
8VFT|1|5|A|3648
8VFT|1|5|A|3649

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain j

eL37