HL_8VFT_053

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUA(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8VFT|1|5|A2M|3760

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_053 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.2278

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8VFT|1|5|G|3757
8VFT|1|5|U|3758
8VFT|1|5|A|3759
8VFT|1|5|A2M|3760
8VFT|1|5|C|3761
8VFT|1|5|PSU|3762
8VFT|1|5|A|3763
8VFT|1|5|PSU|3764
8VFT|1|5|G|3765
8VFT|1|5|A|3766
8VFT|1|5|C|3767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain v

eEF2