HL_8VFT_089

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_089 not in the Motif Atlas

Homologous match to HL_8C3A_200

Geometric discrepancy: 0.2229

The information below is about HL_8C3A_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VFT|1|9|U|416
8VFT|1|9|C|417
8VFT|1|9|A|418
8VFT|1|9|G|419
8VFT|1|9|G|420
8VFT|1|9|G|421

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain JJ

uS4

Chain LL

uS17

Chain WW

uS8

Chain XX

uS12