HL_8VFT_096

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG(PSU)(PSU)CAAAG

Length

9 nucleotides

Bulged bases

8VFT|1|9|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_096 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.1737

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8VFT|1|9|U|820
8VFT|1|9|G|821
8VFT|1|9|PSU|822
8VFT|1|9|PSU|823
8VFT|1|9|C|824
8VFT|1|9|A|825
8VFT|1|9|A|826
8VFT|1|9|A|827
8VFT|1|9|G|828

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24