HL_8VFT_098
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VFT_098 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.1356
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8VFT|1|9|A|957
8VFT|1|9|G|958
8VFT|1|9|G|959
8VFT|1|9|U|960
8VFT|1|9|G|961
8VFT|1|9|A|962
8VFT|1|9|A|963
8VFT|1|9|A|964
8VFT|1|9|U|965
8VFT|1|9|U|966
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain OO
- uS11
- Chain aa
- eS26
- Chain w
- mRNA
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