HL_8VS9_024

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8VS9|1|16S|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_024 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1149

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8VS9|1|16S|G|1089
8VS9|1|16S|U|1090
8VS9|1|16S|U|1091
8VS9|1|16S|A|1092
8VS9|1|16S|A|1093
8VS9|1|16S|G|1094
8VS9|1|16S|U|1095
8VS9|1|16S|C|1096

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S02

30S ribosomal protein S2

Chain S07

30S ribosomal protein S7

Chain S21

30S ribosomal protein S21